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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTGAAGAAGGAGGTATCATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAGgtttagctctctttacaaatctcattgctttcttttcatgtgtttgtgtggaatctctgagatttttagtattagtctcttaattcctttatgcatag

Basic information

species Arabidopsis thaliana
transcript AT1G31190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31190.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G25880.1 (Glycine max), 5'ss of exon 3
GTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTGAAGAAGGAGGTATCATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAGgtttagctctctttacaaatctcattgctttcttttcatgtgtttgtgtggaatctctgagatttttagtatt--agtctcttaattcctttatgcatag------
|| ||||| |||||||||   ||||||||||||||||| |||||||||||  | || || ||| |  | |||||||| |||||||||||||||||||||||| | |   |   |   |    || | | ||||   |   |  || |  |||||  |||  ||||  || | |  ||| |  | | | ||       |||      
GTGGTGAAAAAGAATTTTGAAGATCATCTTATTCTTGGGGAAGAAGGAGGAGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGgtctgggatttcatttga----cacttccttctaaac-cataatt-taaggaatgactgtaatttacagcactcaagtttaattagttctcagaaactagaaccag

upper sequence: AT1G31190.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0011g01800.t01 (Vitis vinifera), 5'ss of exon 4
GTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTGAAGAAGGAGGTATCATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAGgtttagctctctttacaaatc--tcattgctttcttttcatgtg--tttgtgtggaatctctgagattttt-agtattagtctcttaattcctttatgcatag
|| || |  || || ||| | ||||| || |||||||| || || |||||  ||||||| ||| | ||||||||||| |||||||| || |||||| ||||||| || | | | | |  ||    |||   || || | || |   ||||| |  ||| | | |  ||||| ||  ||    | ||||||    | |   || 
GTTGTAAGAAAAAACTTTGGAGATCACCTCATTCTTGGGGAGGAGGGAGGGCTCATCGGAGATACTTCTTCTGATTATCTCTGGTGTATCGATCCTTTAGgtttggcac-catgaaagctcgactattttcttattgttattttattttgttttaaatttttaaatttttttagctttttaattttaattttagt-ttttta-