1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGTGGAGCATTGTGTAACGGGCAAAAAATTCATGTCAGTAAGACCGATGCTgtaagtaacttatcaagaatccaattttaagtttcgacatggtgtgttcaatggttttggtttattagatatttattcgggtttgaatgaag
species | Arabidopsis thaliana |
transcript | AT1G31190.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCAGTAAGACCGATGCT GTGGAGAGTAGCACTTCTTATCACAGGGTTTGGTTATGAACATGATGATGCEST: gi|164070055|gb|ES061827.1|ES061827
genomic: TCAGTAAGACCGATGCTgtaagtaact ... ttgaatgaagGTGGAGAG-AGCACTTCTTATCACAGGGTTTGGTTATGAACATGATGATGC
EST: GTGGAGCATTGTGTAACGGGCAAAAAATTCATGTCAGTAAGACCGATGCT GTGGAGAGAGCACTTCTTATCACAGGGTTTG-TTATGAAC
genomic: GTGGAGCATTGTGTAACGGGCAAAAAATTCATGTCAGTAAGACCGATGCTgtaagtaact ... ttgaatgaagGTGGAGAGAGCACTTCTTATCACAGGGTTTGGTTATGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGGAGCATTGTGTAACGGGCAAAAAATTCATGTCAGTAAGACCGATGCTgtaagtaacttatcaagaatccaattttaagtttcgacatggtgtgttcaatggttttggtttattagatatttattcgggtttgaatgaag
- GTGGAG
- - GGAGCA