1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTGTTACTTGGAAGGAGGGTCTCACATAAGTAAGGTAGAAGAAGTATATGATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattcccttatcatttttcttccccttaaaaactgaacttccattagcaatctgatgttttatacttgtactattacacatcag
species | Arabidopsis thaliana |
transcript | AT1G27110.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116378181|gb|EG420773.1|EG420773
genomic: GATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428736|gb|EG471328.1|EG471328
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428741|gb|EG471333.1|EG471333
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGGCGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428746|gb|EG471338.1|EG471338
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428724|gb|EG471316.1|EG471316
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116378186|gb|EG420778.1|EG420778
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428723|gb|EG471315.1|EG471315
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: GGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428726|gb|EG471318.1|EG471318
genomic: GGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428743|gb|EG471335.1|EG471335
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428737|gb|EG471329.1|EG471329
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428727|gb|EG471319.1|EG471319
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428729|gb|EG471321.1|EG471321
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428721|gb|EG471313.1|EG471313
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428745|gb|EG471337.1|EG471337
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAAEST: gi|116428731|gb|EG471323.1|EG471323
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
EST: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGAT GTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
genomic: ATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattccct ... tacacatcagGTTTATACGGATGCTCTTGGTTTGTTGTTGCGTTTAGACACACGCGGTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTACTTGGAAGGAGGGTCTCACATAAGTAAGGTAGAAGAAGTATATGATCATCAGATGTGGAAAGAGCTGGAGAAAGACGATGCTGTTGCTAGAGATgtaattcccttatcatttttcttccccttaaaaactgaacttccattagcaatctgatgttttatacttgtactattacacatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT