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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATAAACAGAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctctctttttcacattagggttgtctttagtttctatggtttgatactttagacgattcgatgatgtggtgggttttgtaaagtctccttctgt...

Basic information

species Arabidopsis thaliana
transcript AT1G27110.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423252|gb|EG465844.1|EG465844
EST:     ACGCCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116452142|gb|EG494734.1|EG494734
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGTGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116423221|gb|EG465813.1|EG465813
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116423253|gb|EG465845.1|EG465845
EST:     ACGCCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116452153|gb|EG494745.1|EG494745
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116423246|gb|EG465838.1|EG465838
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116423254|gb|EG465846.1|EG465846
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116452150|gb|EG494742.1|EG494742
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116452149|gb|EG494741.1|EG494741
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116423244|gb|EG465836.1|EG465836
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116423255|gb|EG465847.1|EG465847
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116423222|gb|EG465814.1|EG465814
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
EST: gi|116452154|gb|EG494746.1|EG494746
EST:     ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAG                         GTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT
genomic: ACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctct ... tcttatgaagGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATTCTAGAAGCGCCAAACTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGATAAACAGAAAGAAGAAAGCAGATTTGTTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATTGCTTCCATTAACTCTTATTCTGACCAGgttcgtctctctttttcacattagggttgtctttagtttctatggtttgatactttagacgattcgatgatgtggtgggttttgtaaagtctccttctgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG