Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttcttgctgatcctgatttacaattatggagacttttttgagttctatgtcatatcataagaaccgtctttttctttctttcaaatcag

Basic information

species Arabidopsis thaliana
transcript AT1G27110.3
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428740|gb|EG471332.1|EG471332
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428736|gb|EG471328.1|EG471328
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428746|gb|EG471338.1|EG471338
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACAGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116378187|gb|EG420779.1|EG420779
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428742|gb|EG471334.1|EG471334
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTTTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428724|gb|EG471316.1|EG471316
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428723|gb|EG471315.1|EG471315
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428730|gb|EG471322.1|EG471322
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428747|gb|EG471339.1|EG471339
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116378182|gb|EG420774.1|EG420774
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTTTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428726|gb|EG471318.1|EG471318
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428732|gb|EG471324.1|EG471324
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428737|gb|EG471329.1|EG471329
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428727|gb|EG471319.1|EG471319
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428729|gb|EG471321.1|EG471321
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428721|gb|EG471313.1|EG471313
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
EST: gi|116428745|gb|EG471337.1|EG471337
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGGAAAGGAAACTACGAGATAGCTTT
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGG-AAAGGAAACTACGAGATAGCTTT
EST: gi|116428731|gb|EG471323.1|EG471323
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGG
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGG
EST: gi|116428725|gb|EG471317.1|EG471317
EST:     CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTG                         CTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA
genomic: CATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttctt ... ttcaaatcagCTTGCTGAAGCTGTTTATGAATACGGGAAAGGAAACTACGAGATAGCTTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACATCCGCTATGAACCCGAAGAAACAAAAGCTGATGCAGAAAGCGATTCTGgtctgttcttgctgatcctgatttacaattatggagacttttttgagttctatgtcatatcataagaaccgtctttttctttctttcaaatcag

- - - - - - - -  CGAAGA
- - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - GCTGAT