Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactcctcaaaaacactattatatccatatacttcggctatatcttcgttttctcagctactaactctgcgtttacaacacccgaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCTTGTGGCGTTTGCTG

Basic information

species Arabidopsis thaliana
transcript AT1G27110.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428740|gb|EG471332.1|EG471332
EST:     TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116378187|gb|EG420779.1|EG420779
EST:     TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116428742|gb|EG471334.1|EG471334
EST:     TAATGAAATCTGGTACAAGTTGTTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGAGGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116428724|gb|EG471316.1|EG471316
EST:     TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTA
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTA
EST: gi|116428723|gb|EG471315.1|EG471315
EST:     TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116428730|gb|EG471322.1|EG471322
EST:     TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116428747|gb|EG471339.1|EG471339
EST:     TAATGAAATTTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116378182|gb|EG420774.1|EG420774
EST:     TAATGAAATTTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116428732|gb|EG471324.1|EG471324
EST:     TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116428727|gb|EG471319.1|EG471319
EST:     TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
EST: gi|116428725|gb|EG471317.1|EG471317
EST:     TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTG                         CTATTGAAGTACTAAAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT
genomic: TAATGAAATCTGGTACAAGTTGCTGTTACTCAACGGCAAATCTTCAACTGgtacactcct ... gaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatcttcgttttctcagctactaactctgcgtttacaacacccgaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCTTGTGGCGTTTGCTG
                    tactaac  putative branch site (score: 0)
                                 tttacaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacactcctcaaaaacactattatatccatatacttcggctatatcttcgttttctcagctactaactctgcgtttacaacacccgaacctgcagCTATTGAAGTACTAGAGAAGGTGACCAAACAGAGAGATGGTGCTCCTTTCTTGTGGCGTTTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG