1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGCAGGATTGCTCTCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATGgtatgcttatctgtctgtttatttttccttaagttgagaaatcatgttccgttgattcctgagaatgtagctttaagttaatttgaactggtatcttgtcttttatgcgtatgcctctaagttcaatctgtttctggatgtgcag
species | Arabidopsis thaliana |
transcript | AT1G20110.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATG GCAGAAGTGTCACAAAGGTTGAGTAATGCCAAGGAAACCACTGGCAGGAATEST: gi|164209765|gb|ES035246.1|ES035246
genomic: TCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATGgtatgcttat ... ggatgtgcagGCAGAAGTGTCACAAAGGTTGAGTAATGCCAAGGAAACCACTGGCAGGAAT
EST: AATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATG GCAGAAGTGTCACAAAGGTTGAGTAATGCCAAGGAAACCACTGGCAGGAATEST: gi|86079507|gb|DR375264.1|DR375264
genomic: AATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATGgtatgcttat ... ggatgtgcagGCAGAAGTGTCACAAAGGTTGAGTAATGCCAAGGAAACCACTGGCAGGAAT
EST: TCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATG GCAGAAGTGTCACAAAGGTTGAGTAATGCCAAGGAAACCACTGGCAGGAAT
genomic: TCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATGgtatgcttat ... ggatgtgcagGCAGAAGTGTCACAAAGGTTGAGTAATGCCAAGGAAACCACTGGCAGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGCAGGATTGCTCTCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTGACCGGTGCATGgtatgcttatctgtctgtttatttttccttaagttgagaaatcatgttccgttgattcctgagaatgtagctttaagttaatttgaactggtatcttgtcttttatgcgtatgcctctaagttcaatctgtttctggatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC