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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGACTCCGGTAGACATTGAAGCTAAACGTATCAGATTGCAATCAAATAGTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAGgttcataaaatttacaaattttgtttcattaaaagtctatatgtcaattccatcatgatttcttttgactaatccaatgttcttatgttggtgggttttag

Basic information

species Arabidopsis thaliana
transcript AT1G20110.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G20110.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G02510.1 (Glycine max), 5'ss of exon 4
TAAGACTCCGGTAGACATTGAAGCTAAACGTATCAGATTGCAATCAAATAGTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAGgttcataaaatttacaaattttgtttcattaaaagtctatatgtcaattccatcatgatttcttttgactaatccaatgttcttatgttggtgggttttag--
 ||||  || || ||||||||  | | ||| |||||||||||||| ||||||||||| || ||||| ||| |||| |  ||||| |||||||   | |||||    | |  || ||| |||  | | || | || | |  | ||   ||  || || | ||    | |       |||| | |        | ||    ||  
AAAGAGCCCTGTTGACATTGAGCCAAGACGGATCAGATTGCAATCTAATAGTTACACTACTAACACACTTTTGGATATAGTGACTGCTGCAACCATACAGgtattcagatatttcaactttc-tgttataacaattgttcaggtt--ttttatgataacttaggctaagatgataaatgctttccgaaaaattggcggaagat

upper sequence: AT1G20110.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G02550.1 (Glycine max), 5'ss of exon 3
TAAGACTCCGGTAGACATTGAAGCTAAACGTATCAGATTGCAATCAAATAGTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAGgttcataaaatttacaaattttgtttcattaaaagtctatatgtcaattccatcatgatttcttttgactaatc---caatgttcttatgttggtgggttttag
 |||| ||| || ||||||||  | | ||| |||||||||||||| ||||||||||| || ||||| ||| |||| |  ||||| |||||||   | |||||    | |  || ||| |||  | | || | || | |  | ||   ||  || || | ||    |   | ||    || ||    | | ||  |  | ||   
AAAGAGTCCTGTTGACATTGAGCCAAGACGGATCAGATTGCAATCTAATAGTTACACTACTAACACACTTTTGGATATAGTGACTGCTGCAACCATACAGgtattcagatatttcaactttc-tgttataacaattgttcaggttt-ttttatgataaattaggctagatcataagacactggctctgtatttttaaggtta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86015833|gb|DR311579.1|DR311579
EST:     GTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAG                         GCCAAGGAGATCGGGGGAAGTAGCAGGCCTCCCACCTCTGGAAAACTGGTT
genomic: GTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAGgttcataaaa ... tgggttttagGCCAAGGAGATCGGGGGAAGTAGCAGGCCTCCCACCTCTGGAAAACTGATT
EST: gi|86068172|gb|DR363929.1|DR363929
EST:     GTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAG                         GCCAAGGAGATCGGGGGAAGTAGCAGGCCTCCCACCTCTGGAAAACTGGTT
genomic: GTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAGgttcataaaa ... tgggttttagGCCAAGGAGATCGGGGGAAGTAGCAGGCCTCCCACCTCTGGAAAACTGATT
EST: gi|86079507|gb|DR375264.1|DR375264
EST:     GTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAG                         GCCAAGGAGATCGGGGGAAGTAGCAGGCCTCCCACCTCTGGAAAACTGGTT
genomic: GTTACACCACCAACACCCTTCTGGACACTGTGACGGCTGCAATGTTTCAGgttcataaaa ... tgggttttagGCCAAGGAGATCGGGGGAAGTAGCAGGCCTCCCACCTCTGGAAAACTGATT