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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttttttttttttggaagaaaaacacatttctcttgtagtcaaagtaaaagggctagggtagttttggtgattagttacatcacttgattcttattttcttgcttagctgtggtatgttgttctcattccatgttatttttggctttagGTACCTGATGAAGCTGTTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGG

Basic information

species Arabidopsis thaliana
transcript AT1G20110.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86015833|gb|DR311579.1|DR311579
EST:     GTGATTGGATGAACATTATAAAGCCTGTTAATGAGGAGAAAGATCATTGG                         GTACCTGATGAAGCTGTTTCTAAGTGCACATCATGTGG
genomic: GTGATTGGATGAACATTATAAAGCCTGTTAATGAGGAGAAAGATCATTGGgtaggttttt ... ttggctttagGTACCTGATGAAGCTGTTTCTAAGTGCACATCATGTGG
EST: gi|86079507|gb|DR375264.1|DR375264
EST:     GTGATTGGATGAACATTATAAAGCCTGTTAATGAGGAGAAAGATCATTGG                         GTACCTGATGAAGCTGTTTCTAAGTGCACATCATGTGGTTCAGATTTCGGT
genomic: GTGATTGGATGAACATTATAAAGCCTGTTAATGAGGAGAAAGATCATTGGgtaggttttt ... ttggctttagGTACCTGATGAAGCTGTTTCTAAGTGCACATCATGTGGTTCAGATTTCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttgcttagctgtggtatgttgttctcattccatgttatttttggctttagGTACCTGATGAAGCTGTTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGG
                                       ttattttt  CT-rich tract
                                    atgttattttt  TA-rich tract