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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTGATGAAGCTGTTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGGgtattattttccccgatctaacaatctgaattaaatttttggccatgttgggactatcaaaccttatggattttttattttctag

Basic information

species Arabidopsis thaliana
transcript AT1G20110.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164056247|gb|ES146754.1|ES146754
EST:     TTTCGGTGCATTTATACGAAGG                         CACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGC
genomic: TTTCGGTGCATTTATACGAAGGgtattatttt ... tattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGC
EST: gi|86087854|gb|DR383613.1|DR383613
EST:     TTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGG                         CACCACTGCAGGAATTGTGGTGAAGTCTTCTGTGACAAGTGTACTCAAGGC
genomic: TTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGGgtattatttt ... tattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGC
EST: gi|86079507|gb|DR375264.1|DR375264
EST:     TTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGG                         CACCACTGCAGGAATTGTGGTGAAGTCTTCTGTGACAAGTGTACTCAAGGC
genomic: TTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGGgtattatttt ... tattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGC