1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattattttccccgatctaacaatctgaattaaatttttggccatgttgggactatcaaaccttatggattttttattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGCAGGATTGCTCTCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTG
species | Arabidopsis thaliana |
transcript | AT1G20110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCGGTGCATTTATACGAAGG CACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGCEST: gi|86087854|gb|DR383613.1|DR383613
genomic: TTTCGGTGCATTTATACGAAGGgtattatttt ... tattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGC
EST: TTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGG CACCACTGCAGGAATTGTGGTGAAGTCTTCTGTGACAAGTGTACTCAAGGCEST: gi|86079507|gb|DR375264.1|DR375264
genomic: TTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGGgtattatttt ... tattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGC
EST: TTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGG CACCACTGCAGGAATTGTGGTGAAGTCTTCTGTGACAAGTGTACTCAAGGC
genomic: TTTCTAAGTGCACATCATGTGGTTCAGATTTCGGTGCATTTATACGAAGGgtattatttt ... tattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGC
ttaaatttttggccatgttgggactatcaaaccttatggattttttattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGCAGGATTGCTCTCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTG
ttttttattttct CT-rich tract
ttatggattttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattttccccgatctaacaatctgaattaaatttttggccatgttgggactatcaaaccttatggattttttattttctagCACCACTGCAGGAATTGTGGTGACGTCTTCTGTGACAAGTGTACTCAAGGCAGGATTGCTCTCACTGCTGAGGATAATGCTCCTCAAGTCCGTGTTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC