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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatctatccgaaccccaccatttttaaatccttttgggaattgggaatcccaacatggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag

Basic information

species Zea mays
transcript GRMZM2G154165_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 1
CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaag-atctatccgaaccccaccatttttaaatccttttgggaattgggaatcccaacat--ggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag
|  || |        | || |  |||| ||||||   || ||     ||||||  || ||  | |||||||| ||||||||||| ||||| || ||||||||||| || | |||  |  || |   | |     |||        ||  |  ||| |   |  | |||  |   ||   ||| ||  |   |  || |              
CACAACCACCACCTCCATCAGGCACGCGTTCGGCAACGTCCTCGCGTTCTTCATACTTCTCATGATCGGCGTTCTCGCCTTCTCGATCCGTCTCTTCTCCgtaagcatttttcctcattccgcagatctggttacctgaacctcgtttcggttccgacttttcgttttctcaacgcgattgcatgcttctatattcagcg------------

upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 1
CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaag-atctatccgaaccccaccattttta------aatccttttgggaattgggaatcccaacatggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag
|   | |    |   | || |  |||||||||||   || ||     |||||| ||| || ||||||||||| || |||||||| ||||| || ||||||||||| || | |||  |  || |   | |         | |||  |     ||  || |       |  ||  | ||    ||||| | |       | |                
CACCACCACCAACTCCATCAGGCACGCCTTCGGCAACGTCCTCGCGTTCTTCATCCTTCTCCTCATCGGCGTTCTGGCCTTCTCGATCCGTCTCTTCTCCgtaagcatttctcctcattccgcagatctggttacctgaacctcgttccggttccgagttttcgttttcttaacacgattgcatgcttctaaattcagcc----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71447977|gb|DR829027.1|DR829027
EST:     TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCC                         GTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
genomic: TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatcta ... tgtgccgcagGTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
EST: gi|76017470|gb|DT944640.1|DT944640
EST:     TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCC                         GTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
genomic: TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatcta ... tgtgccgcagGTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC