Sequence
atgc intronic sequence ATGC exonic sequenceTTATTATGTTACTGCTCAGAAGGGGACAATATACCTGATGCTTTCAATCTGGCTGACGCGGCATGCAAACTTCTTGAGCTTAGCCCCCAAAATTTCCATGgtgagcttgaaccctttcccattttcccacccccttcctccaaacaaaaaggagaacataaataaaatcctttcaatgagctgaatcaggtcaggaattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01800.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g55784.1 (Oryza sativa), 5'ss of exon 6
TTATTATGTTACTGCTCAGAAGGGGACAATATACCTGATGCTTTCAATCTGGCTGACGCGGCATGCAAACTTCTTGAGCTTAGCCCCCAAAATTTCCATGgtgagcttgaaccc----tttcccattttcccacccccttcctccaaacaaaaaggagaac--------ataaataaaatc--ctttcaatgagctg-aatcaggtca-ggaattg-------------------------------
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GTACTATGCTACTGCTCAGAAGGGGACAATATGCCAGAATCTTTCCAGTTGGCTGAGGCAGCATGCAAACTTGTTGCTCAAGGCCCTGAACAGTTCCATGgtacatctatatatcaagtttattagtttttcatctattaaccgttggtaatttgccttactttccttctttaggaatatcgatattcaatattctgtgatcagattttggaatcctgtgtttacaaatcctgctgtgaattttcag
upper sequence: Vv03s0063g01800.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G05160.1 (Glycine max), 5'ss of exon 6
---TTATTATGTTACTGCTCAGAAGGGGACAATATACCTGATGCTTTCAATCTGGCTGACGCGGCATGCAAACTTCTTGAGCTTAGCCCCCAAAATTTCCATGgtgagcttgaacc--ctttcccattttcccacccccttcctccaaacaaaaaggagaacataaataaaatcctttcaatgagctgaatcaggtcaggaattg-
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TGCTTGTTATGTTATTGCTCAGAAGGGGACAACATATCAGATGCTTTTCAATTAGGCGATGCAGTATGTAAACTTCTCCAGCTGAATCATCCTATTAC---TGgtgagctttctttatctttgttgtcttttcttttttttttttgtaatgatttgtacgatttattta---tctttgtcgtcttctataacgtttcattgttttt
upper sequence: Vv03s0063g01800.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G13100.1 (Glycine max), 5'ss of exon 6
---TTATTATGTTACTGCTCAGAAGGGGACAATATACCTGATGCTTTCAATCTGGCTGACGCGGCATGCAAACTTCTTGAGCTTAGCCCCCAAAATTTCCATGgtgagcttgaaccctttcccattttcccacccccttcctccaaacaaaaaggagaacataaataaaatcctttcaatgagctga--atcaggtcaggaattg
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TGCTTGTTATGTTATTGCTCAGAAGGGGACAACATATCGGATGCTTTTCAGTTAGGCGATGCAGTATGTAAACTTCTCCAGCTGAGTCACCCTACTAC---TGgtgagctttc-tttttctttgttgtcttatatatatatatatatatatatatatataatgatttgtatgctttatttatctttgtcgtctttttataaata-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110364456|gb|EC924217.1|EC924217EST: GGCTGACGCGGCATGCAAACTTCTTGAGCTTAGCCCCCAAAATTTCCATG GTGATCAAGGTGGTAATTGGGCTATTCCATTTTCATGGAAGACTGTTTATG
genomic: GGCTGACGCGGCATGCAAACTTCTTGAGCTTAGCCCCCAAAATTTCCATGgtgagcttga ... ttttgttcagGTGATCAAGGTGGTAATTGGGCTATTCCATTTTCATGGAAGACTGTTTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATTATGTTACTGCTCAGAAGGGGACAATATACCTGATGCTTTCAATCTGGCTGACGCGGCATGCAAACTTCTTGAGCTTAGCCCCCAAAATTTCCATGgtgagcttgaaccctttcccattttcccacccccttcctccaaacaaaaaggagaacataaataaaatcctttcaatgagctgaatcaggtcaggaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggaat