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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCTTTGGGAGCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttactacggattcttgtgtactctgttgaaactttcttgtgtgtcgtatgcatcccacctggctgttctctaggatctgtatatatctcagagtc...

Basic information

species Physcomitrella patens
transcript PP1S100_117V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100397347|gb|BY972453.1|BY972453
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|162221566|gb|FC397583.1|FC397583
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|100392297|gb|BY953293.1|BY953293
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|100441292|gb|BY962581.1|BY962581
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|100360601|gb|BY984200.1|BY984200
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|67574817|gb|BJ947641.1|BJ947641
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|162278567|gb|FC454029.1|FC454029
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|67572934|gb|BJ945758.1|BJ945758
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|208357262|gb|DC910659.1|DC910659
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|100432786|gb|BY978739.1|BY978739
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|18348999|gb|BJ181048.1|BJ181048
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|100425066|gb|BY976955.1|BY976955
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|100437022|gb|BY979644.1|BY979644
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|18357729|gb|BJ189788.1|BJ189788
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
EST: gi|18342277|gb|BJ174312.1|BJ174312
EST:     GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTG                         AGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG
genomic: GCCCTTGAGCAATTCTATTACAATGGGTTACGAGTGTCAACCACTGCTTGgtatgttact ... ttctttgcagAGTATCGAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAG