Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaatcactatctcttctttcactgccggaaattgttcatcctgaaatttaaaaactgttccaagatgttaattaaatttgggtactaactattttattccttgcag

Basic information

species Physcomitrella patens
transcript PP1S207_33V6.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161597|gb|FC339012.1|FC339012
EST:     CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG                         GTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
genomic: CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaa ... ttccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
EST: gi|162170619|gb|FC347115.1|FC347115
EST:     CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG                         GTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
genomic: CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaa ... ttccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
EST: gi|162245369|gb|FC421271.1|FC421271
EST:     CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG                         GTCCGATCCATTTTTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
genomic: CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaa ... ttccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
EST: gi|37838965|gb|BJ596973.1|BJ596973
EST:     CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAG                         GTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT
genomic: CTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaa ... ttccttgcagGTCCGATCCATTTCTTCTGGGCCCAAATAATCAATATCTCTCTAAAATCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTTCCGGCATGGCTGGGATGTTTGCCATTAAAAGGAGACCTTGTGGAGGCTAAAATTGTTCATGAGCAGCTTTGCAAAATGGTCGAGAGgtgtgtctaatcactatctcttctttcactgccggaaattgttcatcctgaaatttaaaaactgttccaagatgttaattaaatttgggtactaactattttattccttgcag

- - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT