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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTACCCATCCCATTCCCGATCTCACAGGATACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattcaagctttgaagcagtgcttactggaaggtctgaattggatctttgatatcatggtgggagttttgtcttcacgtctggttttgagtcttgcaatatacaaagatgtgatctgtctcaatgttgcgtcgtgatgcag

Basic information

species Physcomitrella patens
transcript PP1S100_117V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208395424|gb|DC924478.1|DC924478
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|37837091|gb|BJ595099.1|BJ595099
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|162153494|gb|FC329380.1|FC329380
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|162278566|gb|FC454028.1|FC454028
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|162230898|gb|FC406737.1|FC406737
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|67698241|gb|BJ958474.1|BJ958474
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|162209307|gb|FC385227.1|FC385227
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|162153495|gb|FC329381.1|FC329381
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|162221565|gb|FC397582.1|FC397582
EST:     ACATCACCGAAGTTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
EST: gi|162232324|gb|FC408667.1|FC408667
EST:     ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAG                         ATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG
genomic: ACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattc ... cgtgatgcagATTTATCCTCCTATTAATGTTTTGCCGTCTCTGTCACGGTTGATGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATTACCCATCCCATTCCCGATCTCACAGGATACATCACCGAAGGTCAGATATATGTAGATCGACAGCTGCAAAATAGACAGgtattgattcaagctttgaagcagtgcttactggaaggtctgaattggatctttgatatcatggtgggagttttgtcttcacgtctggttttgagtcttgcaatatacaaagatgtgatctgtctcaatgttgcgtcgtgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC