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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGgtggccaatctttacatgcatgctttgcaaacctaaccaaccagagcgtgaagcagggtcacctgcacatgatggtttctttcgtgtccagtccagcgtcatgttttcttgttgacgatgacaagataattttcctagttcactatccaagaagttgatcgtttcaataattttattttgacag

Basic information

species Oryza sativa
transcript LOC_Os01g54020.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G177970_T01 (Zea mays), 5'ss of exon 13
CTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGgtggccaatctttacatgcatgctttgcaaacctaaccaaccagagcgtgaagcagggtcacctgcac-atgatggtttctttcgtgtccagt--ccagcgtcatgttttcttgttgacgatgacaagataattttcctagttcactatccaagaagttgatcgtttcaataattttattttgacag
  |||| |||||||||||||||||||| |||||||  ||||||||||| || ||||||||||| || | ||| ||||| |||||  | ||| ||| ||||| || | | ||    || ||   |  | | |||| ||| ||  ||   |  | ||   ||||     | | |  |  ||||  | |  ||   ||| |     |   || || ||||| |                                                 
TATGGAGTTTGACAACCCAGAGAGGCCGGAATGCAGAAATCTTCTCTCTATATACCAGATTATCACTGAGAAGACTAAGGAGgtatctaatttttgcatgc-tgttgtacacctataccctggctaaacatgaaccagagttgcccatattaagactttttcacctatatgctatatccagtat-agattagattgatatttttactaatattatttttcag-----------------------------------------------

upper sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA06G09240.1 (Glycine max), 5'ss of exon 13
CTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGgtggccaatctttacatgcatgctttgcaaacctaaccaaccagagcgtgaagcagggtcacctgcacatgatggtttctttcgtgtccagtccagcgtcatgttttcttgttgacgatgacaagataattttcctagttcactatccaagaagttgatcgtttcaataattttattttgacag
|||||||||||||||| | |||||||||||||| ||||||||| | || || |||||| ||||| |||| || || ||||||||    |||  |       ||  |||  |    |    |      |  |   |||     |  |  || ||||      |||  | | |||                                                                                             
CTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTGTTTCCATATACCAGCTTATTTCAGGAAAGACGAAAGAGgtcagaaatgct-------atattttatatgtgtgtgtat-----gtatattgcacttataattctacttgatacccatttttatatgcag---------------------------------------------------------------------------------------------

upper sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA04G09130.2 (Glycine max), 5'ss of exon 13
------------------CTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGgtggccaatctttacatgcatgctttgcaaacctaaccaaccagagcgtgaagcagggtcacctgcacatgatggtttctttcgtgtccagtccagcgtcatgttttcttgttgacgatgacaagataattttcctagttcactatccaagaagttgatcgtttcaataattttattttgacag
                   ||||||||||||||| | |||||||||||||| ||||||||||| || || |||||| ||||| |||| || || ||||||||    |||  |    |  |||  |                  | | ||   |||        |  || ||||      |||  | | |||      ||   |                                                                                 
TTATGACAAATCTTACAGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatgctatattatatgtgt--------------gtgtgtgtgtattgcaattatgattctacttgatacccatttttatatgcaggaagttgtgcag---------------------------------------------------------------------------------

upper sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA04G09130.1 (Glycine max), 5'ss of exon 13
------------------CTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGgtggccaatctttacatgcatgctttgcaaacctaaccaaccagagcgtgaagcagggtcacctgcacatgatggtttctttcgtgtccagtccagcgtcatgttttcttgttgacgatgacaagataattttcctagttcactatccaagaagttgatcgtttcaataattttattttgacag
                   ||||||||||||||| | |||||||||||||| ||||||||||| || || |||||| ||||| |||| || || ||||||||    |||  |    |  |||  |                  | | ||   |||        |  || ||||      |||  | | |||                                                                                             
TTATGACAAATCTTACAGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGgtcagaaatgctatattatatgtgt--------------gtgtgtgtgtattgcaattatgattctacttgatacccatttttatatgcag---------------------------------------------------------------------------------------------

upper sequence: LOC_Os01g54020.1 (Oryza sativa), 5'ss of exon 13
lower sequence: AT2G25840.2 (Arabidopsis thaliana), 5'ss of exon 11
CTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGgt--ggccaatctttacatgcat-gctttgcaaacctaaccaaccagagcgtgaagcagggtcacctgcacatgatggtttctttcgtgtccagtccagcgtcatgttttcttgttgacgatgacaagataattttcctagttcactatccaagaagttgatcgtttcaataattttattttgacag
  | |||||||||||  | ||||| ||||||||||||||||| ||||| || || |||||| || |||| || |  ||||||||  ||  ||       |||  | | ||||     |  |    |     | ||   |    || | ||   |  ||| || |||  |  |  | ||| | | |    ||| |  | |                                                                      
GCTTGAATTTGACAATGCTGAGAGACCTGAATGCAACAATCTCCTCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAGgtatggagaaagagataatgtttagatttgggtcacggagatgctttcacatgtctcttactcccttgactacaatgattacttaag-atataatccggtgaccacatttttaatcggttgcag---------------------------------------------------------------