1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttcttcctctcgtagatataggaggttgaaataagcgaatacagcttcttcaggatttcgttgatgcgtgaacctgccccccgtgcgacacgt...
species | Oryza sativa |
transcript | LOC_Os01g56230.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAG GTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTEST: gi|88732948|gb|CI756125.1|CI756125
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... ttttcatcagGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
EST: AGGCATCCTTCCACCGCCGACCTCCACCTCGGCCCGGAATAGAACTGAAG GTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTACTEST: gi|88578737|gb|CI687685.1|CI687685
genomic: AGGCATCCTTCCACCGCCGACCTCCACCTCGGCC-GGAATAGAACTGAAGgtattcgttc ... ttttcatcagGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAG GTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTEST: gi|15008478|gb|AU222866.1|AU222866
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... ttttcatcagGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGNCGGAATAGAACTGAAG GTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTEST: gi|300215972|gb|HO088598.1|HO088598
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... ttttcatcagGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAG GTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTEST: gi|88314263|gb|CI602595.1|CI602595
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... ttttcatcagGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTG-A- ---AGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTEST: gi|88337687|gb|CI632189.1|CI632189
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... ttttcatcagGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
EST: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAG GTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGTEST: gi|38468775|gb|CF952906.1|CF952906
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... ttttcatcagGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
EST: GAGGCATCCTTCCACCGCCGAACTCCACCTCGGCCGGAATAGAACTGAAG GTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
genomic: GAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttc ... ttttcatcagGTCAGGAGTCAAGGTATATCAGATGATGGATCTGTCCACGACTTCAGTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGCGGCGCAGGGCCAGCGAGAGCTCAGGTTCGGAGGGGGGCTATGCGGGAGGCATCCTTCCACCGCCGACCTCCACCTCGGCCGGAATAGAACTGAAGgtattcgttcttcctctcgtagatataggaggttgaaataagcgaatacagcttcttcaggatttcgttgatgcgtgaacctgccccccgtgcgacacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG