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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGTTTCTCTGCTTTCTCAGTTCTTTCATTCTGTCGCAACCACCATCTACTTCAGgtagtagcacaattgaatcttttccagatttatagtggcatataatctagttctataatccaaataactaaagattacttattgattcccttgatcctctctgcag

Basic information

species Glycine max
transcript GLYMA20G34340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 4
TCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGTTTCTCTGCTTTCTCAGTTCTTTCATTCTGTCGCAACCACCATCTACTTCAGgtagtagcacaattgaatcttttccagatttatagtggcatataatctagttctataatccaaataactaaagattacttattgattcccttgatcctctctgcag
 || || |||| ||| |||||||||||| |  | |||||||| |||| |||||| || || ||||||||||| || || |||||||||||||| || |||||         |||  ||    | || | |  | | | || |   |  |   | |   |  |  ||  |   ||||   | |  |                     
CCCGATATGTGCTTCAATCTGGTCCTGCCCGGCAGAAGGAGTAATGACTTTCTCGGCCTTTTCAGTTCTTTCGTTTTGCCGCAACCACCATCTCCTGCAGgt-------tcatttcattgccttcatactatttgcgtcaaac--ttaaaggcaactttttagttatgtgttgattttctgtgcag--------------------

upper sequence: GLYMA20G34340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 1
TCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGTTTCTCTGCTTTCTCAGTTCTTTCATTCTGTCGCAACCACCATCTACTTCAGgtagtagcacaattgaatcttttccagatttatagtggcatataatctagttctataatccaaataactaaagattacttattgattcccttgatcctctctgcag
 || || |||| ||| || ||| |||||||  | |||||||| ||||||||||| || || |  ||||||||||| || |||||||||||||| || |||||               || ||||          || || |  |  ||| ||   | |  |   ||| |  || ||  |  ||   |   |||||  ||| |||||
CCCCATATGTGCTTCAATTTGGCCCTGCTCAGCAGAAGGAGTAATGAGTTTCTCGGCCTTTTTGGTTCTTTCATTTTGCCGCAACCACCATCTCCTGCAGgt---------------tcatttc----------gttgccttcatactattttcgtcaaact--taaatgcaggtttttcgtta--tgtattgattttctgtgcag