Sequence
atgc intronic sequence ATGC exonic sequenceCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAGgtaaattcaccaagtaaaagtatggtttggattttttttgtcatatcttggtatgccagttaatgtctggaatctgtttggaatttgaatttctgaatgcctgattttcaccag
Basic information
species | Glycine max |
transcript | GLYMA12G08080.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAGgtaaattcaccaagtaaaagtatggtttggattttttttgtcatatcttggtatgccagttaatgtctggaatctgtttggaatttgaat-ttctgaatgcctgattttcaccag
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CCTGGTCCGGATTCGGTTGGCATCTTTGCCATTTCGCAAAGATGCAATGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGCTTAGAACCTATGAAGgtaag----------aaagggacactcttttcgttgctaaagata-caagtcataatgtttcattttc--aaccagtttgggttttttgtgttcttacag---------------
upper sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 5
CCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAGgtaaattc--accaagtaaaag-----------tatgg---tttggattttttttgtcatatcttg--gtatgccagttaatgtctggaatctgtttggaatttgaat--ttctgaatgcctgattttcaccag----------
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CCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACATAGTTGCAGTGGAGTGGCAGCTCGAGCATGCGGTCTTGTAAGTTTAGAACCCTCAAAGgtaagcttcagccaattatgtggtcaggtcatttatgaaaatttgaacatttttcttgatattttattgtaggacctttattttttcatgttataataatattagcatgctttgaaaagtaatatttttgtttgcgactgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24136783|gb|BU927293.1|BU927293EST: GTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAG ATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGTGACTGTCGGAGC
genomic: GTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAGgtaaattcac ... ttttcaccagATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGTGACTGTCGGAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAGgtaaattcaccaagtaaaagtatggtttggattttttttgtcatatcttggtatgccagttaatgtctggaatctgtttggaatttgaatttctgaatgcctgattttcaccag
- - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC