1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGATCCGCTTTATGGTGTTGGTGGGCAACCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGGgtaaatgcttgtactatagtttacaaggatattattcaatcattcactttgtagaatggtctactatattaaattatatcaaattgttctatgcaatgaa...
species | Glycine max |
transcript | GLYMA20G31860.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGG GGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTTEST: gi|5752561|gb|AI959848.1|AI959848
genomic: CCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGGgtaaatgctt ... ctttgtgtagGGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTT
EST: CCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGG GGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTTEST: gi|254328533|gb|GR832905.1|GR832905
genomic: CCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGGgtaaatgctt ... ctttgtgtagGGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTT
EST: CCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGG GGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTTEST: gi|254328534|gb|GR832906.1|GR832906
genomic: CCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGGgtaaatgctt ... ctttgtgtagGGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTT
EST: CCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGG GGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTT
genomic: CCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGGgtaaatgctt ... ctttgtgtagGGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATCCGCTTTATGGTGTTGGTGGGCAACCTAAATGCTTAGATTGTGACTTTGTAGATGAGAGTTTTGCTGAAGATGGgtaaatgcttgtactatagtttacaaggatattattcaatcattcactttgtagaatggtctactatattaaattatatcaaattgttctatgcaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG