Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAAgtcccttacctaactccttcaatgatcacatagcgataatgttgctaatttcgaagcccttacacttgcaggtaaag

Basic information

species Arabidopsis thaliana
transcript AT2G33340.3
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116472804|gb|EG515396.1|EG515396
EST:     CTGAATGGAACCTTATCAAGACACTCCCAGATCTTTCCGGCACTGGTAAA                         G
genomic: CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|116472804|gb|EG515396.1|EG515396
EST:     CTGAATGGAACCTTATCAAGACACTCCCAGATCTTTCCGGCACTGGTAAA                         G
genomic: CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|124731446|gb|EH822848.1|EH822848
EST:     CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAA                         G
genomic: CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|124731446|gb|EH822848.1|EH822848
EST:     CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAA                         G
genomic: CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|86059718|gb|DR355475.1|DR355475
EST:     TCCCAGATCTCTCCGGCACTGGTAAA                         G
genomic: TCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|86059718|gb|DR355475.1|DR355475
EST:     TCCCAGATCTCTCCGGCACTGGTAAA                         G
genomic: TCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|164228968|gb|EL976423.1|EL976423
EST:     TCCCAGATCTCTCCGGCACTGGTAAA                         G
genomic: TCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|124953130|gb|EL028347.1|EL028347
EST:     CTCCGGCACTGGTAAA                         G
genomic: CTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|124953130|gb|EL028347.1|EL028347
EST:     CTCCGGCACTGGTAAA                         G
genomic: CTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|116444557|gb|EG487149.1|EG487149
EST:     CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAA                         G
genomic: CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-
EST: gi|116444557|gb|EG487149.1|EG487149
EST:     CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAA                         G
genomic: CTGAATGGAACCTTATCAAGACACTCCCAGATCTCTCCGGCACTGGTAAAgtcccttacc ... gcaggtaaag-