1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagaacacattattgttacttttttcaaactgtttttcatcatttgtgatgtaactaatgttttctgattattatttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG
species | Zea mays |
transcript | GRMZM5G840928_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|94474415|gb|EB703373.1|EB703373
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGAEST: gi|50323072|gb|CO518198.1|CO518198
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
EST: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAA AATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
genomic: GACGTAGATGAGGAAAGTGCTTCTGAGCAGCTAATCGCACTTTGCCAAAAgtaagaacac ... ttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGA
tgtttttcatcatttgtgatgtaactaatgttttctgattattatttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG
tttttgtct CT-rich tract
taactaatgttttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacacattattgttacttttttcaaactgtttttcatcatttgtgatgtaactaatgttttctgattattatttttgtctagAATTGGTGATGTAACAATAATGCAGAAAGGAAAAGCTGATGTCATCAGTGACGGTAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT