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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT

Basic information

species Zea mays
transcript GRMZM2G154165_T02
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 12
------ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
         |  |  ||| || |     || ||   | |  |  || | ||||| |  ||   |    |   |  || ||| |  | |   || ||   |   ||| || |||||||||||||| || || || ||||||||||| || || || || ||||| || |||||||| || |||||||||||||||||  | || || 
ctttgaaagtttacctttctttttatgtcagtctgcaattatt-ttctttttatgatttggatc--caatcctaagtacttaatttgtttgttgtgtaac---cagTACTTATGCAAGCAAGTATATACCGATCATTGCTAGTGTTAGTGAGCATCAGCCACCTACTTGGCCTTCATACTTTATGGATATCAATGTCTTGGCATTC

upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 12
-----ttatcaatttttgttatacaaccaatccatattcttccttt-tctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
     |  |  |  |||    | |      |   |    ||  ||| | ||||| |  ||   |    |   |  || ||| |  | |   || ||    |  ||| || |||||||||||||| || || || ||||||||||| || || || || ||||| || |||||||| || |||||||||||||||||  | || || 
aagtgtctttgaagtttacctttctttttgttagtgaaattattttctttttatgatttgggtc--caatcctaagtacttaatttgtttgttgtg----taacagTACTTATGCAAGCAAGTATATACCAATCATTGCTAGTGTTAGTGAGCATCAGCCACCTACTTGGCCTTCATACTTTATGGATATCAATGTCTTGGCATTC

upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 12
-----------------------------------------ttatcaatttttgttatacaaccaatccatattcttccttttc--tttataa--actgacacat-tgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
                                         ||||    | |  || | ||         |||||  | || ||  |||||||  | | ||| |  ||||  | | |   |    |||  || | |  |    |||||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||||||  | || || 
gtgagtggttctagtttttcaatctttcttctcctagccatttattttatgtctttgtccacgtttcaggtattccgctttatcattttataattattaacatacctgacactctttttctttgttttatctatcgtac--aacagAACTTATGCAAGCAAGTATATTCCAATTATTGCAAGTGTCAGTGAACATCAACCTCCAACTTGGCCATCTTATTTCATGGATATCAATGTTTTGGCTTTC

upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 12
-----ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
     || ||||  ||||   | |         ||  | |||  || || |     ||||   ||   || | || | ||| | | |         |  || |||||| |||||||||||||| || || || ||||| ||||| || ||||| |||||||| || ||||| ||||| |||||||| || |||||  | || |||
ctttattttcaaaatttgaatttctttttgctgat-ctattctattcctattagtcctga---atcagctttctgacattc-cttcttttggggagttttgacagAACTTATGCAAGCAAGTATATACCAATTATTGCCAGTGTTAGTGAACATCAACCACCTACTTGGCCATCTTACTTTATGGACATTAATGTTTTGGCATTT

upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: PP1S404_37V6.1 (Physcomitrella patens), 3'ss of exon 12
-------ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
        ||| ||| | |||||| |     ||  | | |  |   | | |   |   |||||     ||||||   |  ||    |  | ||  || ||     |||||||||||||||||||| ||||| || ||||||||||| ||||| || || ||||| ||||||||||| ||||| ||||| |||||  |  | ||||| 
acgattgctatgaatgtctgttatgcc-tggataaaaagtagtttgtgtttcacttggctgacttcccgactgtg-attgttggtgtgacgctgatgttc-----agAACCTATGCAAGCAAGTATATCCCAATCATTGCTAGTGTTAGCGAGCATCAGCCACCCACCTGGCCTTCGTATTTCATGGACATCAACATTTTGGCCTTC

upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: EFJ15189 (Selaginella moellendorffii), 3'ss of exon 12
ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
                                       |    || ||   ||   |  | |  ||  ||  |     |||  ||||| ||   | ||| || ||||| ||||||||||| |||||||| || ||||| || ||||| || || || || ||||| || || |||||||||||||||||||| || |||
--------------------------------------gtaagcttttacgttgtttc-ctaaaggtcggtggtaatgttttttctttttctgacg-cagGACTTATGCGAGCAAGTACATTCCTATAATAGCCAGTGTCAGTGAACATCAGCCGCCGACATGGCCATCCTACTTTATGGATATCAATGTGCTCGCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
                  ctgtttgtccttcacc  CT-rich tract