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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaaaaccctcaactccttatatcatggtgttgtactgtttaatccgtcctattttggcaaatttttattttgttgggtttatttttttcttatttatagGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAG

Basic information

species Oryza sativa
transcript LOC_Os01g54020.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54020.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G177970_T02 (Zea mays), 3'ss of exon 6
gcaaaaccctcaactccttatatcatggtgttgtactgtttaatccgtcctattttggcaaatttttattttgttgggtttatttttttcttattta-tagGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAG
   |  || |     |   ||       ||   ||  || | |    |   |  |||   ||  || | | |  | |   | ||  |   || |||| |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||  ||||||||
-agagtccattgttgcagaatccttcaatgccttatggtgttacatatttcagattgctgaaggttgactataatagtactgttgatgatttttttaatagGGTGATGAAAATGTTGGGGTTGCACTTTTGACTTATCCTGTTCTAATGGCTTCTGACATTCTTTTGTACCAG

upper sequence: LOC_Os01g54020.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA04G09130.2 (Glycine max), 3'ss of exon 6
---gcaaaaccctcaactccttatatcatggtgttgtactgtttaatccgtcctattttggcaaatttttattttgttgggtttatttttttcttatttatagGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAG
   || |||   |||   || | | |        ||  |    |  |   |  ||| ||  ||  | |  |  |  | |  | | ||    |   || | ||||| |||||| | ||||| || || |||||||||||||||||| | ||||||||||| || || || || |||
tttgctaaa---tcaggcccatgtttttcttcagtgctcctcatgctggcttgtatgttttcatttatccaaataatagattcttttggaattggatctgtagGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAG

upper sequence: LOC_Os01g54020.2 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA06G09240.2 (Glycine max), 3'ss of exon 2
---gcaaaaccctcaactccttatatcatggtgttgtactgtttaatccgtcctattttggcaaatttttattttgttgggtttatttttttcttatttatagGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAG
      |  |||     ||  |  |        |  | |||  |  |  ||  |  |||  |  ||    ||    | |  | | ||    |   |||| ||||| |||||| | ||||| || || |||||||||||||||||| | ||||||||||| || || || || |||
taaatcaggcccatggttctcttcagtgctcc-tcatgctggcttgtatgttttcatttatcttatccaaata--atagattcttttggaattggatttgtagGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAG

upper sequence: LOC_Os01g54020.2 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv04s0008g00200.t01 (Vitis vinifera), 3'ss of exon 6
-gcaaaaccctcaactccttatatcatggtgttgtactgtttaatccgtcctattttggcaaatttttattttgttgggtttatttttttcttatttatagGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAG
       | ||       ||  |||||||| |   | ||   | | | ||  | |||  ||      |          |||  |   |||||  ||| ||||| |||||||||||||| || || ||| |||||||||||||| | ||||||||||| |||||  | || |||
tattttgcacttgtaatgttcaatcatggtttgagaatgagca-ttcttctaacttttccagtgccattacacaagatgttcttcaatttctgttttgtagGGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcctattttggcaaatttttattttgttgggtttatttttttcttatttatagGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAG
                                 tttatttttttcttat  CT-rich tract
              aaatttttattttgtt  TA-rich tract