1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgagcatagttgatcattaccatttattttatttcaccatttgtttactttctaggttactgctattcagtgtttattcaattactgtgtgctctgctgttcatattattcatcacttgggttgaccattgtcagGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCA
species | Oryza sativa |
transcript | LOC_Os01g56230.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTAT GTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTEST: gi|300215972|gb|HO088598.1|HO088598
genomic: ACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATgtaagtgagc ... ccattgtcagGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCT
EST: ACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTAT GTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTEST: gi|24208073|gb|AU225100.1|AU225100
genomic: ACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATgtaagtgagc ... ccattgtcagGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCT
EST: ACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTAT GTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTEST: gi|29660432|gb|CB656707.1|CB656707
genomic: ACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATgtaagtgagc ... ccattgtcagGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCT
EST: ACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTAT GTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCT
genomic: ACCTTGCTATGTTATCCTGGGCTTATCCTTCCCTTGGCGGAATGGAGTATgtaagtgagc ... ccattgtcagGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCT
attactgtgtgctctgctgttcatattattcatcacttgggttgaccattgtcagGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCA
ggttgac putative branch site (score: 4)
ttcatattattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgagcatagttgatcattaccatttattttatttcaccatttgtttactttctaggttactgctattcagtgtttattcaattactgtgtgctctgctgttcatattattcatcacttgggttgaccattgtcagGTTCTTCACCACTTGCTGTCAATTATTTCTTTAGTCTATGCTATTTATTCTGAAGAAGGACAGTTGTACACATACATGGTTCTCATCTCTGAAACAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG