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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcacaaagttgtctgttgtttgtaatttatagttttgtatgtcatcacggtgctttttcccctagattttttaaaaagaaactattagacctttttatgaacttgtgatattttgcagGAGGCCACTGGCAAAGCACCTTTTGGAATCACAATACTTTCCTCCATCCGTTCGATCTGCATACATGTTTCTTGCTCCACTTCAACTTATATGTACACCT

Basic information

species Oryza sativa
transcript LOC_Os01g22390.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g22390.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G118641_T01 (Zea mays), 3'ss of exon 4
---gtatca-caaagttgtctgttgtttgtaatttatagttttgtatgtcatcacggtgctttttccccta-gattttttaaaaagaaactattagacctttttatgaacttgtgatattttgcagGAGGCCACTGGCAAAGCACCTTTTGGAATCACAATACTTTCCTCCATCCGTTCGATCTGCATACATGTTTCTTGCTCCACTTCAACTTATATGTACACCT
      ||| ||| |  ||||| ||||| || || |||   |   ||  || |||  || |  |      | |   ||  || |   |||| |||    |  |  |||  | ||||| | |||||||||||||   ||||||||||||||||| |||  ||||||||||||||| |||||||||||||| ||||||||||||||||||||| || | | |||| ||
gtaacttcagcaacgaagtctgatgtttatagttcatatgatcaaatcccaccactttgatgatgttttgatggaattccaagacataactgtta---ttgatactgatttggtgatctcttgcagGAGGCCATCAGCAAAGCACCTTTTGGAGTCATCATACTTTCCTCCATCAGTTCGATCTGCATATATGTTTCTTGCTCCACTTCAAGTTTTGTCTACATCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttttaaaaagaaactattagacctttttatgaacttgtgatattttgcagGAGGCCACTGGCAAAGCACCTTTTGGAATCACAATACTTTCCTCCATCCGTTCGATCTGCATACATGTTTCTTGCTCCACTTCAACTTATATGTACACCT
     ttttaaaaagaaacta  TA-rich tract