1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttgcttgcatttactaacctcatgatcttaaagtgcaatgtaaatttggattttcatctatattacagttagttagtctgatataattattatatgcagGGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATACGAAGAAGTTTCTCATATTGCTTGATAACCGGCCATGGCTGCAAGACCAG
species | Oryza sativa |
transcript | LOC_Os02g53210.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCGGCGGGAAGCGGCATTTCTTCCCCCTTACGAGCTTGCAAATCGG GGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATACEST: gi|29621684|gb|CB626695.1|CB626695
genomic: GAGAGCGGCGGGAAGCGGCATTTCTTCCCCCTTACGAGCTTGCAAATCGGgtaagtctcc ... ttatatgcagGGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATAC
EST: GAGAGCGGCGTGAAGCGGCATTTCTTCCCCCTTACGAGCTTGCAAATCGG GGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATACEST: gi|218503370|gb|FG964055.1|FG964055
genomic: GAGAGCGGCGGGAAGCGGCATTTCTTCCCCCTTACGAGCTTGCAAATCGGgtaagtctcc ... ttatatgcagGGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATAC
EST: GAGAGCGGCGTGAAGCGGCATTTCTTCCCCCTTACGAGCTTGCAAATCGG GGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATACEST: gi|58595254|gb|CF993562.1|CF993562
genomic: GAGAGCGGCGGGAAGCGGCATTTCTTCCCCCTTACGAGCTTGCAAATCGGgtaagtctcc ... ttatatgcagGGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATAC
EST: GAGAGCGGCGTGAAGCGGCATTTCTTCCCCCTTACGAGCTTGCAAATCGG GGATTTACAATCATATCTTGGTGAACTTACTATATTTTTGTGCCCTCATAC
genomic: GAGAGCGGCGGGAAGCGGCATTTCTTCCCCCTTACGAGCTTGCAAATCGGgtaagtctcc ... ttatatgcagGGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATAC
tttggattttcatctatattacagttagttagtctgatataattattatatgcagGGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATACGAAGAAGTTTCTCATATTGCTTGATAACCGGCCATGGCTGCAAGACCAG
gtctgat putative branch site (score: 4)
ttagttagtctgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgcttgcatttactaacctcatgatcttaaagtgcaatgtaaatttggattttcatctatattacagttagttagtctgatataattattatatgcagGGATTTACAATCATATCTTGCTGAACTTACTATATTTTTGTGCCCTCATACGAAGAAGTTTCTCATATTGCTTGATAACCGGCCATGGCTGCAAGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA