1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttgaagtaacttcccaatcgagctgccttgttcttgattataatatataatgtctttgtatttctctgatgaggttttgtttctggatactgtaatgcaGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACT
species | Glycine max |
transcript | GLYMA18G47790.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCA GGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAACCCTTACCAGACATEST: gi|192321175|gb|FK013593.1|FK013593
genomic: ATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAggttagtatg ... ctgtaatgcaGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACAT
EST: ATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCA GGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACAT
genomic: ATGGTTGAGATGTCACAGGCTTTAAATCTAATTGATGTTTGCTATGAGCAggttagtatg ... ctgtaatgcaGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACAT
atataatgtctttgtatttctctgatgaggttttgtttctggatactgtaatgcaGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACT
ctctgat putative branch site (score: 4)
tttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaagtaacttcccaatcgagctgccttgttcttgattataatatataatgtctttgtatttctctgatgaggttttgtttctggatactgtaatgcaGGTTGGGCCTGACATGCTTATTAGTGGATTTCTTCAGCCCTTACCAGACATGGTACCTGTAATCCCATCACCCGATGAAACTTTTGTTGCTGATCCTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - cttccca
- - - - - - - - - - - -ctgcctt
- - - - - - - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttctg