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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtttaatgattttttttttccaatgcaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtactttttttttctggcttccatttgactcaatggttatttattgtctcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATTTGGACCAGGCAAATCCATATGAGTACTTAAAAGGGATGATCAACTGTCACAGAA

Basic information

species Glycine max
transcript GLYMA16G22880.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G22880.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G11980.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgaggtttaatgattttttttttccaatgcaaactttctttgtccttgttgcttgtcttttaccttgaaattttcagtttagttgcagctccttggtactttttttttctggcttccatttgactcaatggttatttattgtct---cagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATTTGGACCAGGCAAATCCATATGAGTACTTAAAAGGGATGATCAACTGTCACAGAA
           |||  | ||||  |  ||   |  |    || |||||         |  |||| ||| | |  |  || ||  || |  |  |    | | | |       |  | || |||  | ||||| |  || ||||||   ||||||||||||||||||||||||||||| ||||| || || |||||||| || |||  |||| | |||||||| |||||||| ||||| |||||||||||||
----------gtgaaatattttgacatataacatttgaggttatcctt---------ccattacattgtattcctttgtcta--tggaattgttc---attctgtaagctctgtcttcacttg--ttaatggat-cttcttgtctatgcagTTCTTAAGATGCCGAGAGGCATGGCTCACTGGAATTCTTGAGGATTTAGATCAGAAAAATGCCTATGAGTATTTAAAAGGCATGATAAACTGTCACAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtactttttttttctggcttccatttgactcaatggttatttattgtctcagTTCTTAAGATGCCGAGAGGCATGGCTTACTGGTATACTCGAGGATTTGGACCAGGCAAATCCATATGAGTACTTAAAAGGGATGATCAACTGTCACAGAA
                         atttgac  putative branch site (score: 4)
                                              ttgtctc  putative PPT
                                  aatggttatttatt  TA-rich tract