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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttcgtttcctgtttcaacggtatttcagtattctttttatttttctgctctaggattgttgtgaaatttttttgttgtgtttcaatttgtggtgttgtgttgtctggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTTTATAGAGGCGCGGATTGCTGTGTTCTTGTGTATGATGTGAATGTGATGA

Basic information

species Glycine max
transcript GLYMA20G31150.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193144|gb|HO033578.1|HO033578
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|298186082|gb|HO036715.1|HO036715
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATGTGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|207794831|gb|GD763924.1|GD763924
EST:     ACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|151399673|gb|EV269544.1|EV269544
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTTGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|8827737|gb|BE211467.1|BE211467
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|298167138|gb|HO010577.1|HO010577
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATACCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|151393176|gb|EV263051.1|EV263051
EST:     ATTCTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|254337577|gb|GR849423.1|GR849423
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|192321754|gb|FK013622.1|FK013622
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgaaatttttttgttgtgtttcaatttgtggtgttgtgttgtctggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTTTATAGAGGCGCGGATTGCTGTGTTCTTGTGTATGATGTGAATGTGATGA
     aatttttttgttgt  TA-rich tract