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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcaagcttgtgtgatttcaattcatttcatttcaaagtgatatcaatccttttgttcataaaggaagttgggagggttattttttatgatagccctttaattcttatcacatgagactaatgtgattcttctccctttgatattgcagCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGATG

Basic information

species Glycine max
transcript GLYMA12G08080.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08080.1 (Glycine max), 3'ss of exon 16
lower sequence: AT5G60690.1 (Arabidopsis thaliana), 3'ss of exon 16
gcaagcaagcttgtgtgatttcaattcatttcatttcaaagtgatatcaatccttttgttcataaaggaagttgggagggttattttttatgatagccctttaattcttatcacatgagactaatgtgattcttctccctttgatattgcagCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGATG
                                                                        |  | |   ||      |  | |  |     |  | | |    | ||||  ||   ||  |    |     || |||||||||  |||||||||||| ||||| || |||||||| || |||||| | || ||||| || ||||| |||||||| || ||| | || || ||||| ||||
-----------------------------------------------------------------------gtatgtgtcctacaccaaacaaaaagcagaatacacctgtagttttagacgtataatatggt----ctggatatgttgcagCCACAGCCAGTGTTCATGTTTGCGAACCAAGCTGGTCTAGACATGCTAGAGACAACACTTGTAGCCTTACAAGATATAACACTCGAAAAGATATTCGATG

upper sequence: GLYMA12G08080.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 3'ss of exon 16
gcaagcaagcttgtgtgatttcaattcatttcatttcaaagtgatatcaatccttttgttcataaaggaagttgggagggttattttttatgatagccctttaattcttatcacatgagactaatgtgattcttctccctttgatattgcagCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGATG
                       || |     |||   ||   || |||| ||      |||||| |     ||  ||   | ||||||      |   |  |||| ||          | ||||  |     |   | |||||| |||||| |||||||||| || || |||||||| || || || ||||||||| |||| |||||| |||||||| ||||||||||| |||||||||| ||||||||||
---------------------tgatgcgc--aattgtgaaaaaatgtcaaacc----aatcataatga----tgaaagtactgtttttt------gatttgcaattattc---------attaatagg-----tgctcttttgat-ttgcagTCATTGCCAGTTTTGATCTTTGCAAACCAGGCAGGACTTGACATGCTGGAGACAACTTTAGTAGCTCTACAAGACATCTCATTGGATAAGATATTTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308099106|gb|HO760947.1|HO760947
EST:     TGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAG                         CCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAA
genomic: TGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAGgcaagcaagc ... gatattgcagCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAA
EST: gi|151412482|gb|EV282294.1|EV282294
EST:     TGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAG                         CCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAA
genomic: TGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAGgcaagcaagc ... gatattgcagCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAA
EST: gi|15201671|gb|BI424995.1|BI424995
EST:     TGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAG                         CCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAA
genomic: TGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAGgcaagcaagc ... gatattgcagCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAA
EST: gi|308098056|gb|HO761227.1|HO761227
EST:     TGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAG                         CCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAA
genomic: TGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAGgcaagcaagc ... gatattgcagCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttaattcttatcacatgagactaatgtgattcttctccctttgatattgcagCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGATG
                                ttcttctccctttgat  CT-rich tract
     aattcttat  TA-rich tract