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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtataacactgtggggttactggttctttgattttactagtgcatctttcatattctctttgtcgtatacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG

Basic information

species Arabidopsis thaliana
transcript AT5G22770.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 5
------gtgtgtataacactgtggggttactggttctttgattttactagtgcatctttcatattctctttgtcgt---atacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG
|| | ||| || | ||| || ||| || | | | | || || | || ||| | ||| | ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||||| || | ||||| || || ||||||||
gtaaatttgaatgtaattttgcttgtatacactttttttctttattgttttccttcaaatgcatcttattagtccttttttaccttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA12G30520.1 (Glycine max), 3'ss of exon 5
------gtgtgtataacactgtggggttactggttctttgattttactagtgcatctttcatattctctttgtcg---tatacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG
|| | ||| || | ||| || ||| || | | | || || | || ||| | || | ||||||||||| |||||||||||| ||||||||||||| |||||||| ||||| ||||||| |||||||||||| || | ||||| || || ||||||||
gtaaatttgaatgtaattttgctagtatacactttttttccttattgttttctttcaaatgcatcttattagtccctttttatcttaagGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCA

upper sequence: AT5G22770.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 5
-----------------gtgtgtataacactgtggggttactggttcttt--gattttactagtgcatctttcatattctctttgtcgtatac-ttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG
|| | | | |||| | ||| | | | || || ||| | | | | || || |||| | ||||| ||||| || ||||| |||||||| ||||| ||||||||||| ||||| | ||| |||||||| ||| | ||||| || || ||||| ||
cttcttgtttcattatgaaatgggcattctttgaaacatgtgggttgcctaagatgtgtcctatttatgcttaggtgattctcttttgcaaacctttcagGTCAGATCGGATGGCGCAGCTTTTAGATGAACGTGATCTGGGTGTCTTGACATCTTCAATGAGCCTTCTTGTTGCTTTAGTATCAAACAACCATGATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttctttgattttactagtgcatctttcatattctctttgtcgtatacttccagGGCGGATCGTATGGCACAACTTTTGGATGAACGAGATCTTGGTGTCTTGACGTCTTCTACGAGTCTTCTTGTAGCTCTGGTATCTAATAATCATGAGGCG
    ctttgat  putative branch site (score: 5)
 tacttcc  putative PPT
 tttgatttta  TA-rich tract