1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcaccttagaaagtaccttcttcataattttgttgctatgtatttatagtcattttaattttaacatggtagctattagttgtttattttttttgacagATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGGCTCACGGGTTTTATAAAGCAAATCAGATGACCCAGTGTGGTGCATGTCA
species | Zea mays |
transcript | GRMZM5G892742_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGTGACCGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAG ATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGGEST: gi|166625660|gb|EG093344.1|EG093344
genomic: AGAAGTGACTGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAGgtactgtgta ... tttttgacagATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGG
EST: AGAAGTGACCGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAG ATTGTGAGGGTCGEST: gi|87155688|gb|DY400477.1|DY400477
genomic: AGAAGTGACTGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAGgtactgtgta ... tttttgacagATTGTGAGGGTCG
EST: AGAAGTGACCGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAG ATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGGEST: gi|26558823|gb|CA831058.1|CA831058
genomic: AGAAGTGACTGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAGgtactgtgta ... tttttgacagATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGG
EST: AGAAGTGACCGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAG ATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGGEST: gi|5847487|gb|AW000566.1|AW000566
genomic: AGAAGTGACTGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAGgtactgtgta ... tttttgacagATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGG
EST: AGAAGTGACTGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAG ATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGG
genomic: AGAAGTGACTGTCAAGATTCCACATTCAGATATTATTGAAAAGTGCTCAGgtactgtgta ... tttttgacagATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGG
tatagtcattttaattttaacatggtagctattagttgtttattttttttgacagATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGGCTCACGGGTTTTATAAAGCAAATCAGATGACCCAGTGTGGTGCATGTCA
ttttaac putative branch site (score: 2)
ttgtttatttttttt putative PPT
tattagttgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaccttagaaagtaccttcttcataattttgttgctatgtatttatagtcattttaattttaacatggtagctattagttgtttattttttttgacagATTGTGAGGGTCGTGGAGAGAAACCATGCCCTACATGCAATGCTGGTCAGGCTCACGGGTTTTATAAAGCAAATCAGATGACCCAGTGTGGTGCATGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
tgcacct
- - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttt