1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcgtatcattttccctccccttctgtcctgtgattctgtctttttgttggtatgactgttgttctatgctgacaatggaatggttcgatctactgatagGGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGGACATCGATGCTGTTGGGGAAGTCACCCTGCCCGCACATGGAAAATTACC
species | Zea mays |
transcript | GRMZM5G892742_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCCATATCCGTACGNG-GGCAGTTACCAACCTTTTGAGAGCGTCGGGAG GGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGGEST: gi|101399483|gb|EB821613.1|EB821613
genomic: GGCCATATCCGTATG-GTGGCAGTTACCAACCTTCTGAGAGCGTCGGGAGgtgagttttt ... ctactgatagGGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGG
EST: GGGCCATATCCGTATGGTGGCAGTTACCAACCTTCTGAGAGCGTCGGGAG GGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGGEST: gi|71330804|gb|DR802198.1|DR802198
genomic: GGGCCATATCCGTATGGTGGCAGTTACCAACCTTCTGAGAGCGTCGGGAGgtgagttttt ... ctactgatagGGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGG
EST: GGGCCATATCCGTATGGTGGCAGTTACCAACCTTCTGAGAGCGTCGGGAG GGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGGEST: gi|87155688|gb|DY400477.1|DY400477
genomic: GGGCCATATCCGTATGGTGGCAGTTACCAACCTTCTGAGAGCGTCGGGAGgtgagttttt ... ctactgatagGGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGG
EST: GGGCCATATCCGTACGGTGGCAGTTACCAACCTTTTGAGAGCGTCGGGAG GGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGGEST: gi|26558823|gb|CA831058.1|CA831058
genomic: GGGCCATATCCGTATGGTGGCAGTTACCAACCTTCTGAGAGCGTCGGGAGgtgagttttt ... ctactgatagGGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGG
EST: GGGCCATATCCGTACGGTGGCAGTTACCAACCTTTTGAGAGCGTCGGGAG GGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGG
genomic: GGGCCATATCCGTATGGTGGCAGTTACCAACCTTCTGAGAGCGTCGGGAGgtgagttttt ... ctactgatagGGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGG
tgttggtatgactgttgttctatgctgacaatggaatggttcgatctactgatagGGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGGACATCGATGCTGTTGGGGAAGTCACCCTGCCCGCACATGGAAAATTACC
tgctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcgtatcattttccctccccttctgtcctgtgattctgtctttttgttggtatgactgttgttctatgctgacaatggaatggttcgatctactgatagGGATGTACTGGATGAGGTGGAGATCCGACAGCTACTCATTGACCATATTGGACATCGATGCTGTTGGGGAAGTCACCCTGCCCGCACATGGAAAATTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - -ccttctg
- - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgac