1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagattccgctccattcgccgccaccgtcgtcaacaccgacgcgggcgttcaaatcatctgctcccgatcccatcccgtcatcagctcatctgtgggacctcatttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTCTTCAGTGCTGCGCGGCGGTGGCGGGGGCTGGGAAGGGCCTGAGGTGAG
species | Zea mays |
transcript | GRMZM5G892742_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|71330804|gb|DR802198.1|DR802198
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAG CCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTEST: gi|211426296|gb|FL054604.1|FL054604
genomic: GCGCGACGGCGAGGAGCAACGCCGCCCCCTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
EST: CGCGACGGCGAGGAGCAACGCCGCCCCGCTCCTCTCCTCCACCCCGCCAG CYGCGGCGNACCCGCAGCAGCAGCAGTACCAGTTCCTGGGCCGGAGCACCT
genomic: CGCGACGGCGAGGAGCAACGCCGCCCC-CTCCTCTCCTCCACCCCGCCAGgtagattccg ... atttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCT
tctgctcccgatcccatcccgtcatcagctcatctgtgggacctcatttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTCTTCAGTGCTGCGCGGCGGTGGCGGGGGCTGGGAAGGGCCTGAGGTGAG
cctcatttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattccgctccattcgccgccaccgtcgtcaacaccgacgcgggcgttcaaatcatctgctcccgatcccatcccgtcatcagctcatctgtgggacctcatttctgcagCCGCGGCGGACCCGCAGCAGCAACAGTACCAGTTCCTGGGCCGGAGCACCTCTTCAGTGCTGCGCGGCGGTGGCGGGGGCTGGGAAGGGCCTGAGGTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC