1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATGTAGTTCTGTTGGATGACGATGATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagcagtaacatctctagctgtttaacatttgccattacattctttttaaataactttaagagtttaagatgatgagcaattatagatagtgtttcattaatgaaatttcacttgtgtag
species | Zea mays |
transcript | GRMZM5G886883_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTG GGAGGAGTCAAATATCCACTATCCTTCAAGEST: gi|78109684|gb|DV528100.1|DV528100
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGTCAAATATCCACTATCCTTCAAG
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTG GGAGGAGTCAAATATCCACTATTCTTCAAGEST: gi|148947131|gb|EC892444.2|EC892444
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGTCAAATATCCACTATCCTTCAAG
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTG GGAGGAGTNCAA-TATCCACTATCCTTCAAGCACTGATEST: gi|93014964|gb|EB640484.1|EB640484
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGT-CAAATATCCACTATCCTTCAAGCACTGAT
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAGGTG GGAGGAGTCCAATATCCACTATCCCTTCA-GEST: gi|149000423|gb|EE037594.2|EE037594
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGTCAAATATCCACTATCC-TTCAAG
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTG GGAGGAGTCAAATATEST: gi|148992844|gb|EE033671.2|EE033671
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGTCAAATAT
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTG GGAGGAGTCAAATATCCACTATCCTTCAAGEST: gi|149088271|gb|EE177365.2|EE177365
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGTCAAATATCCACTATCCTTCAAG
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTG GGAGGAGTCAAATATCCACTATCCTTCAAGEST: gi|148996312|gb|EE035595.2|EE035595
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGTCAAATATCCACTATCCTTCAAG
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTG GGAGGAGTCAAATATCCACTATCCTTCAAGEST: gi|67031282|gb|CO460031.1|CO460031
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGTCAAATATCCACTATCCTTCAAG
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGNTCAGATATCTAATAAGTG GGAGGGAGTCAA-TATCCACTATCCTTTCA-GEST: gi|71767172|gb|DR965109.1|DR965109
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGG-AGTCAAATATCCACTATCCTT-CAAG
EST: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTG GGAGGAGTCAAATA
genomic: GATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagc ... acttgtgtagGGAGGAGTCAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTAGTTCTGTTGGATGACGATGATGATATAGAGCCTGCTAGATCAGCTGATGTTCAGATATCTAATAAGTGgtaacccagcagtaacatctctagctgtttaacatttgccattacattctttttaaataactttaagagtttaagatgatgagcaattatagatagtgtttcattaatgaaatttcacttgtgtag
- - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - GCTGAT