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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagatttatgcatttatttgttggttatagtccgttacttctttaggccttgctggttatggtttgtgtttctttttaggccttattggttatgttcc...

Basic information

species Zea mays
transcript GRMZM5G886883_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71305066|gb|DR788670.1|DR788670
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|78109684|gb|DV528100.1|DV528100
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|148947131|gb|EC892444.2|EC892444
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|93014964|gb|EB640484.1|EB640484
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|149000423|gb|EE037594.2|EE037594
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|148992844|gb|EE033671.2|EE033671
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|89251283|gb|DY623069.1|DY623069
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCNAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|148982611|gb|EE028409.2|EE028409
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|149088271|gb|EE177365.2|EE177365
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|148996312|gb|EE035595.2|EE035595
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|149000477|gb|EE037653.2|EE037653
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|67031282|gb|CO460031.1|CO460031
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|71767172|gb|DR965109.1|DR965109
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|60339883|gb|DN206856.1|DN206856
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
EST: gi|149078105|gb|EE166854.2|EE166854
EST:     AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA                         AGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT
genomic: AGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagattta ... cttttttcagAGTCTGATGATGAGACCATGGACAGTACGGCTAGCAAACACTATCCAAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAAgtaagatttatgcatttatttgttggttatagtccgttacttctttaggccttgctggttatggtttgtgtttctttttaggccttattggttatgttcc

- - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA