1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tattgctgtttcctgggcttgcatcaagtacatttgtattgttaacttatttcatttcctcctatgcagcaacccttatgtttccttttaattatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA
species | Zea mays |
transcript | GRMZM5G886883_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|78109684|gb|DV528100.1|DV528100
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|148947131|gb|EC892444.2|EC892444
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|93014964|gb|EB640484.1|EB640484
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|149000423|gb|EE037594.2|EE037594
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|148992844|gb|EE033671.2|EE033671
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|89251283|gb|DY623069.1|DY623069
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|148982611|gb|EE028409.2|EE028409
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|149088271|gb|EE177365.2|EE177365
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|148996312|gb|EE035595.2|EE035595
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|149000477|gb|EE037653.2|EE037653
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|67031282|gb|CO460031.1|CO460031
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|71767172|gb|DR965109.1|DR965109
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|60339883|gb|DN206856.1|DN206856
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCEST: gi|149078105|gb|EE166854.2|EE166854
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
EST: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATG GATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
genomic: TCCTCCGGATGAAGAAGGAGCTCGAGCGGCGGAGGGCCAGACAGAGGATGgtgaggaaaa ... attatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGC
cttatttcatttcctcctatgcagcaacccttatgtttccttttaattatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA
ttttaat putative branch site (score: 3)
ttttaattatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgctgtttcctgggcttgcatcaagtacatttgtattgttaacttatttcatttcctcctatgcagcaacccttatgtttccttttaattatgttagGATGTCACGCCCTTGAGACAGACAGTGCAAGCTAAGCGTACTGGTGGCAGCAGTGGAGAAATCTACAACTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -tgctgtt
- - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttc