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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGAGAAAAAGAAAGCTGAAGAGAACAAAGATTATCAAGCTATTGATTATGATGCTCCAATTGAGTCAGATAAAAGTACTATTGGCTTTGGTACTAGGgtcagttttatttcatggactttcccatgttttccattgtaaattagtaattgatcttcaggtcatatgcttatcagaattctctcagtag

Basic information

species Zea mays
transcript GRMZM5G863152_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G863152_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g18720.1 (Oryza sativa), 5'ss of exon 6
TCTTGAGAAAAAGAAAGCTGAAGAGAACAAAGATTATCAAGCTATTGATTATGATGCTCCAATTGAGTCAGATAAAAGTACTATTGGCTTTGGTACTAGGgtcagttttatttcatggactttcccatgttttccattgtaaattagtaattgatcttcaggtcatatgcttatcagaattctctcagtag
 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||||| ||  ||     |   |      ||| |     ||| ||  ||  |    |     |||||| || || | || | || ||| ||
ACTTGAGAAAAAGAAAGCTGATGAGAACAAAAATTATCAAGCTATTGATTATGATGCCCCAATTGAATCAGATAAGAGTACAATTGGTTTTGGTACGAGGgtcagtatttattataaaatggttttgcatttcc----ataatttgttagctagctt----atcatatactaataaaaaatttcccagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166596764|gb|EG145516.1|EG145516
EST:     TAAAAGTACTATTGGCTTTGGTACTAGG                         GTTGGAATTGGTGTTGCAGTTGTTATATTTGGACTAGTCTTCGCTTTTGGG
genomic: TAAAAGTACTATTGGCTTTGGTACTAGGgtcagtttta ... ctctcagtagGTTGGAATTGGTGTTGCAGTTGTTATATTTGGACTAGTCTTCGCTTTTGGG
EST: gi|166654390|gb|EG123193.1|EG123193
EST:     TAAAAGTACTATTGGCTTTGGTACTAGG                         GTTGGAATTGGTGTTGCAGTTGTTATATTTGGACTAGTCTTCGCTTTTGGG
genomic: TAAAAGTACTATTGGCTTTGGTACTAGGgtcagtttta ... ctctcagtagGTTGGAATTGGTGTTGCAGTTGTTATATTTGGACTAGTCTTCGCTTTTGGG