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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTCGAAAGTTGAATGAAAAGAGTCAAACAGGACTAGCAGATTTGGAGGCTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAAgtaagtaccttgtggtggtatcatggggtctgctcgctcctgtgcttttgcacaaatttgttctgtattggaatagataactgaagtcatgcatgacaat...

Basic information

species Zea mays
transcript GRMZM5G863152_T01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211414958|gb|FL458730.1|FL458730
EST:     CTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAA                         GTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGAT
genomic: CTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAAgtaagtacct ... tctatcacagGTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGAT
EST: gi|60359044|gb|DN226017.1|DN226017
EST:     CTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAA                         GTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGAT
genomic: CTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAAgtaagtacct ... tctatcacagGTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGAT
EST: gi|211309916|gb|FL435262.1|FL435262
EST:     CTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAA                         GTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGAT
genomic: CTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAAgtaagtacct ... tctatcacagGTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGAT
EST: gi|71432423|gb|DR813473.1|DR813473
EST:     CTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAA                         GTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGAT
genomic: CTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAAgtaagtacct ... tctatcacagGTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGAT