1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTCGAAGATGGTTCTCCATATGACCCACAATGTATTCAGTTTTCGATGCTTTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAAgtatgtagactcaatgctccatttccctccctacttctatctgcagcacatgttttgcaaggactagtgttagaaggaaatggagtcatcttctaacggg...
species | Zea mays |
transcript | GRMZM5G863152_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAA ATTAAAAGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAGEST: gi|211226059|gb|FL296375.1|FL296375
genomic: TTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAAgtatgtagac ... tttctcccagATTAAAAGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAG
EST: TTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAA ATTAAAAGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAGEST: gi|211226060|gb|FL296376.1|FL296376
genomic: TTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAAgtatgtagac ... tttctcccagATTAAAAGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAG
EST: TTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAA ATTAAAGAGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAGEST: gi|211135925|gb|FL188995.1|FL188995
genomic: TTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAAgtatgtagac ... tttctcccagATTAAA-AGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAG
EST: TTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAA ATTAAAAGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAG
genomic: TTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAAgtatgtagac ... tttctcccagATTAAAAGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGAAGATGGTTCTCCATATGACCCACAATGTATTCAGTTTTCGATGCTTTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAAgtatgtagactcaatgctccatttccctccctacttctatctgcagcacatgttttgcaaggactagtgttagaaggaaatggagtcatcttctaacggg
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA