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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAAgtaaggattataaccacaatgtaaattgaaatagttttttcctttttacacaaaaaggaaactctcgtaacacatttttctctctccttgcag

Basic information

species Zea mays
transcript GRMZM5G848768_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G848768_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g57260.1 (Oryza sativa), 5'ss of exon 6
GGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAAgtaaggattataaccacaatgtaaattgaaatagttttttcctttttacacaaaaaggaaactctcgtaacacatttttctctctccttgcag
|||||||||| ||  |||||||||||||  ||||| | || | ||||||||||||||| ||||| |||||| | ||| ||    ||    |   |    |   ||| |  | ||  |     | |      || |||||||    | || | |        
GGATTGGTGCAGGCCTGGAATCCATGTCAGTAAATGCTATGGGTTGGGAAGGACAAGTAAACCCTAAAgtatgaattctatgagcaccagagcatcctctgtatttctgttgttctctggtgatg-----ccttgtaacaccacgtactttgtag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213184067|gb|FM191388.1|FM191388
EST:     AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAA                         ATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACG
genomic: AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAAgtaaggatta ... ctccttgcagATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACT
EST: gi|60672291|gb|DN475055.1|DN475055
EST:     AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAA                         ATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACG
genomic: AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAAgtaaggatta ... ctccttgcagATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACT
EST: gi|148952059|gb|EC897848.2|EC897848
EST:     AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAA                         ATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACT
genomic: AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAAgtaaggatta ... ctccttgcagATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACT
EST: gi|32859848|gb|CD999529.1|CD999529
EST:     AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAA                         ATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACG
genomic: AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAAgtaaggatta ... ctccttgcagATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACT
EST: gi|6012216|gb|AW061758.1|AW061758
EST:     AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAA                         ATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACG
genomic: AATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAAgtaaggatta ... ctccttgcagATAAGCGCATTCCAGAAAGCACAGGATTGTCTTCTGCCCATGGGAATTACT