1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCCAGCTGTTATGGGCGTTGGTCCTGCCGTGGCCATTCCTGCTGCTGTGAAGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcgattgccttgatctacaccctcttctctcacctatttatccataacatctgattactgaatcatccatgcttag
species | Zea mays |
transcript | GRMZM5G848768_T03 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGTCTGCAGGCCTTGAGATTGGCGACATTGATCTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGAGGCTGGACC-GEST: gi|101394624|gb|EB819247.1|EB819247
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGA-CCGEST: gi|148946680|gb|EC891943.2|EC891943
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGA-CCGEST: gi|74238395|gb|DT646309.1|DT646309
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACC-GEST: gi|6994094|gb|AW453308.1|AW453308
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGCGACATTGATCTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCEST: gi|7031294|gb|AW461032.1|AW461032
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGC
EST: AGTCTGCAGGCCTTGAGATTGGCGACATTGATCTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGA-CCGEST: gi|149076676|gb|EE165319.2|EE165319
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGA-CCGEST: gi|60345789|gb|DN212762.1|DN212762
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGA-CCGEST: gi|88752432|gb|DY536573.1|DY536573
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACC-GEST: gi|149100616|gb|EE186704.2|EE186704
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGA-CCGEST: gi|33942354|gb|CF348954.1|CF348954
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGCGACATTGATCTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACC-GEST: gi|78074202|gb|DV502636.1|DV502636
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACC-GEST: gi|91874450|gb|EB404407.1|EB404407
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACC-GEST: gi|71769910|gb|DR967847.1|DR967847
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACC-GEST: gi|60346439|gb|DN213412.1|DN213412
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGA-CCGEST: gi|211323452|gb|FL157684.1|FL157684
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGCGACATTGATCTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGEST: gi|149101630|gb|EE187762.2|EE187762
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACC-GEST: gi|32859198|gb|CD998879.1|CD998879
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGCGACATTGATCTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACC-GEST: gi|101388206|gb|EB816117.1|EB816117
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGA-CCGEST: gi|32868231|gb|CF007913.1|CF007913
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
EST: AGTCTGCAGGCCTTGAGATTGGCGACATTGATCTGTTTGAACTGAATGAG GCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGGTGGGGCTGGACCGG
genomic: AGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcg ... ccatgcttagGCCTTCGCCTCTCAGTTTGTCTATTGCTGCAACAAGTTGGGGCTGGACCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGCTGTTATGGGCGTTGGTCCTGCCGTGGCCATTCCTGCTGCTGTGAAGTCTGCAGGCCTTGAGATTGGAGACATTGATTTGTTTGAACTGAATGAGgtctgtgtcgattgccttgatctacaccctcttctctcacctatttatccataacatctgattactgaatcatccatgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA