Sequence
atgc intronic sequence ATGC exonic sequence...ttgtgtgagggaatcactagctaggctctgctgttttagtgctcgcaccatcactgtatctaccgaagaaataatgcgtacggcgtgcgtgtcactgcagTGCCTACAGGACGCCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACACCTACCCAGAGGACCTCCTCACTGTTGTTCTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G848768_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g57260.1 (Oryza sativa), 3'ss of exon 2
ttgtgtgagggaatcactagctaggctctgc-tgttttagtgctcgcaccatcactgtatctac-cgaagaaataatgcgtacggcgtgcgtgtcactgcagTGCCTACAGGACGCCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACACCTACCCAGAGGACCTCCTCACTGTTGTTCTCAAG
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-tgtgcttagccat-gtgaatatgccaccacgtatctgaatcgatcaacggatgtgatagatactcttctaaccactttattccatgtttatccacctgcagTGCCTACAGGACACCCATATGCAAGGCCAAGCGAGGAGGTTTCAAGGATACATACCCAGAGGACCTTCTTACTGTTGTTCTAAAG
upper sequence: GRMZM5G848768_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ07201 (Selaginella moellendorffii), 3'ss of exon 2
ttgtgtgagggaatcactagctaggctctgctgttttagt-gctcgcaccatcactgtatctaccgaagaaataatgcgtacggcgtgcgtgtcactgcagTGCCTACAGGACGCCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACACCTACCCAGAGGACCTCCTCACTGTTGTTCTCAAG
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----------------------------------gtgagtcattcaagacttctttcttttcttcacttccaaattttaaactccacctgggttgtggcagAGCATTCCGGACACCGATATGCAAGGCCAAGCGTGGTGGCTTTAAGGACAGCTTCCCGGAGGATTTACTGGTTCCTGTTCTCAAG
upper sequence: GRMZM5G848768_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ09160 (Selaginella moellendorffii), 3'ss of exon 2
ttgtgtgagggaatcactagctaggctctgctgttttagt-gctcgcaccatcactgtatctaccgaagaaataatgcgtacggcgtgcgtgtcactgcagTGCCTACAGGACGCCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACACCTACCCAGAGGACCTCCTCACTGTTGTTCTCAAG
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----------------------------------gtgagtcattcaagacttctttcttttcttcacttccaaattttaaactcctcctgggttgtggcagAGCATTCCGGACACCGATATGCAAGGCCAAGCGCGGTGGCTTTAAGGACAGCTTCCCGGAGGATTTACTGGTTCCTGTTCTCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148952059|gb|EC897848.2|EC897848EST: GCCGCCTACCAGAGGTCCTCCTCCTTCGGGGACGATGTCGTCGTCGTCGC TGCCTACAGGACGCCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACAC
genomic: GCCGCCTACCAGAGGTCCTCCTCCTTCGGGGACGATGTCGTCGTCGTCGCgtaagcctcc ... gtcactgcagTGCCTACAGGACGCCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caccatcactgtatctaccgaagaaataatgcgtacggcgtgcgtgtcactgcagTGCCTACAGGACGCCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACACCTACCCAGAGGACCTCCTCACTGTTGTTCTCAAG
aagaaataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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ttgtgtgagggaatcactagctaggctctgctgttttagtgctcgcaccatcactgtatctaccgaagaaataatgcgtacggcgtgcgtgtcactgcagTGCCTACAGGACGCCGATATGCAAGGCCAAGCGAGGAGGCTTCAAGGACACCTACCCAGAGGACCTCCTCACTGTTGTTCTCAAG
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