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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttagtatctgaatatacatgctactttcgctcttgtgctttagtttggctgctgaatcgctgctctccctctaaacagGGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAA

Basic information

species Zea mays
transcript GRMZM5G848768_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G848768_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g57260.1 (Oryza sativa), 3'ss of exon 5
------------gtacttagtatctg-aatata--catgctactttcgct-cttg--tgctttagtttg-gctgctgaatcgctgctctccctctaaa-cagGGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAA
             ||||   | |    |||||    ||||||  |  ||| | ||  ||||| | ||   | |||| | | |    | ||| || ||| ||||||||||||| ||  |||||||||||||  ||||| | || | ||||||||||||||| ||||| |||
gtaattaactagttactcgttctagacaatatggttatgctaactctgctacatggttgcttcatttaaaggtgctaatttgtctttttccatcaaaaacagGGATTGGTGCAGGCCTGGAATCCATGTCAGTAAATGCTATGGGTTGGGAAGGACAAGTAAACCCTAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213184067|gb|FM191388.1|FM191388
EST:     GGCAGTAGCCGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG                         GGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAG
genomic: GGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAGgtacttagta ... ctctaaacagGGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAG
EST: gi|148952059|gb|EC897848.2|EC897848
EST:     GGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG                         GGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAG
genomic: GGCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAGgtacttagta ... ctctaaacagGGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAG
EST: gi|32859848|gb|CD999529.1|CD999529
EST:     GCAGTAGCCGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAG                         GGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAG
genomic: GCAGTAGCTGATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAGgtacttagta ... ctctaaacagGGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAG
EST: gi|6012216|gb|AW061758.1|AW061758
EST:     GATGTCGCAGCTGCTATAAAGGCTGGNTACTATGACATAG                         GGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAG
genomic: GATGTCGCAGCTGCTATAAAGGCTGGTTACTATGACATAGgtacttagta ... ctctaaacagGGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcgctcttgtgctttagtttggctgctgaatcgctgctctccctctaaacagGGATTGGTGCTGGTTTGGAATCCATGTCCATAAATTCCATTGCTTGGGAAGGACAAGTTAACCCAAAA
                                 tcgctgctctccctct  CT-rich tract
               tttagttt  TA-rich tract