1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caaaaaaacagtacatcatgcgtgtttaatcatcattacaagaataccttaaatacagtacggctcaaattgttttttttgttactcctcaaaatttcagGACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCACCTACACTGCCATGGTGGACTACCCGACCCCAGCCAACTTCCTGGAGAAC
species | Zea mays |
transcript | GRMZM5G848603_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCACAGACAAAGGGCTCCTGGACCTCAGCAAACTCTTCAGAGCCTGCAA GACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCACEST: gi|149005842|gb|EE040132.2|EE040132
genomic: GCCACAGACAAAGGGCTCCTGGACCTCAGCAAACTCTTCAGAGCCTGCAAgtaagctcgt ... aaaatttcagGACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCAC
EST: GCCACAGACAAAGGGCTCCTGGACCTCAGCAAACTCTTCAGAGCCTGCAA GACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCACEST: gi|71430853|gb|DR811903.1|DR811903
genomic: GCCACAGACAAAGGGCTCCTGGACCTCAGCAAACTCTTCAGAGCCTGCAAgtaagctcgt ... aaaatttcagGACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCAC
EST: GCCACAGACAAAGGGCTCCTGGACCTCAGCAAACTCTTCAGAGCCTGCAA GACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCACEST: gi|31353484|gb|CD437841.1|CD437841
genomic: GCCACAGACAAAGGGCTCCTGGACCTCAGCAAACTCTTCAGAGCCTGCAAgtaagctcgt ... aaaatttcagGACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCAC
EST: GCCACAGACAAAGGGCTCCTGGACCTCAGCAAACTCTTCAGAGCCTGCAA GACCGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCAC
genomic: GCCACAGACAAAGGGCTCCTGGACCTCAGCAAACTCTTCAGAGCCTGCAAgtaagctcgt ... aaaatttcagGACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCAC
accttaaatacagtacggctcaaattgttttttttgttactcctcaaaatttcagGACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCACCTACACTGCCATGGTGGACTACCCGACCCCAGCCAACTTCCTGGAGAAC
ctcctca CT-rich tract
aaattgttttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaaaacagtacatcatgcgtgtttaatcatcattacaagaataccttaaatacagtacggctcaaattgttttttttgttactcctcaaaatttcagGACTGTGAAGTACGCTTATTCAATCCGGAACTGGCTGTGGACAGCATTCACCTACACTGCCATGGTGGACTACCCGACCCCAGCCAACTTCCTGGAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA