1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtcgtcggccgtcgagcatgtgctgcttgtacagttgtacgactacaaggggaacatgacaagcagcaggttgtgtgctccactgatgatgcttcatgctcgttgttttcgtttgcagTGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCCTAGCTTCCTCCGCGCCGATCCTGCAGTTCGACCACATAACGCCGTGGAG
species | Zea mays |
transcript | GRMZM5G848603_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAA TGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCCEST: gi|71430853|gb|DR811903.1|DR811903
genomic: CGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAAgtaagtcgtc ... tcgtttgcagTGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCC
EST: CGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAA TGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCC
genomic: CGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAAgtaagtcgtc ... tcgtttgcagTGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCC
cagcaggttgtgtgctccactgatgatgcttcatgctcgttgttttcgtttgcagTGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCCTAGCTTCCTCCGCGCCGATCCTGCAGTTCGACCACATAACGCCGTGGAG
cactgat putative branch site (score: 3)
ttttcgttt putative PPT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcgtcggccgtcgagcatgtgctgcttgtacagttgtacgactacaaggggaacatgacaagcagcaggttgtgtgctccactgatgatgcttcatgctcgttgttttcgtttgcagTGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCCTAGCTTCCTCCGCGCCGATCCTGCAGTTCGACCACATAACGCCGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG