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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcttgtctgaaacctaccgcgcgcgcgcttgcctctggctctgccaccactgacgaaaccgtttctttcttccattgcctgtctgccaccgacgaacagCACCGGTTCTACGGGGAGTCGAAGCCGTTCGGGAACGACTCGTACAGGTCGGCCGAGACGCTGGGCTACCTCACGTCCACGCAGGCGCTGGCCGACTTCG

Basic information

species Zea mays
transcript GRMZM5G848603_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110731|gb|DV529129.1|DV529129
EST:     TCATGTTCGACATCGCGCCCACGTTCGGCGCCCTCCTCGTCTTCATCGAG                         CACCGGTTCTACGGGGAGTCGAAGCCGTTCGGGAACGACTCGTACAGGTCG
genomic: TCATGTTCGACATCGCGCCCACGTTCGGCGCCCTCCTCGTCTTCATCGAGgtacgtatat ... cgacgaacagCACCGGTTCTACGGGGAGTCGAAGCCGTTCGGGAACGACTCGTACAGGTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccactgacgaaaccgtttctttcttccattgcctgtctgccaccgacgaacagCACCGGTTCTACGGGGAGTCGAAGCCGTTCGGGAACGACTCGTACAGGTCGGCCGAGACGCTGGGCTACCTCACGTCCACGCAGGCGCTGGCCGACTTCG
   cactgac  putative branch site (score: 2)
                 tttcttt  TA-rich tract