Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCGCTGGCCGACTTCGCCGTCGTCATCAGGGGCCTGAAGCGGGACCTCGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAAgtaagtcgtcggccgtcgagcatgtgctgcttgtacagttgtacgactacaaggggaacatgacaagcagcaggttgtgtgctccactgatgatgcttcatgctcgttgttttcgtttgcag

Basic information

species Zea mays
transcript GRMZM5G848603_T03
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110731|gb|DV529129.1|DV529129
EST:     CGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAA                         TGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCC
genomic: CGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAAgtaagtcgtc ... tcgtttgcagTGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCC
EST: gi|71430853|gb|DR811903.1|DR811903
EST:     CGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAA                         TGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCC
genomic: CGGCGCCGAGGCCGCTCCCGTCGTCGTCTTCGGCGGCTCCTACGGCGGAAgtaagtcgtc ... tcgtttgcagTGCTGGCTTCCTGGTTCAGGCTCAAGTACCCCCACGTCGCCATTGGTGCCC